Selected Diagnostic Microarray Publications between 2006 and 2007

1. Afset, J. E., G. Bruant, R. Brousseau, J. Harel, E. Anderssen, L. Bevanger, and K. Bergh. 2006. Identification of virulence genes linked with diarrhea due to atypical enteropathogenic Escherichia coli by DNA microarray analysis and PCR. J. Clin. Microbiol. 44:3703-3711.

2. Albrecht, V., A. Chevallier, V. Magnone, P. Barbry, F. Vandenbos, A. Bongain, J. C. Lefebvre, and V. Giordanengo. 2006. Easy and fast detection and genotyping of high-risk human papillomavirus by dedicated DNA microarrays. J. Virol. Methods 137:236-244.

3. Anjum, M. F., M. Mafura, P. Slickers, K. Ballmer, P. Kuhnert, M. J. Woodward, and R. Ehricht. 2007. Pathotyping Escherichia coli by using miniaturized DNA microarrays. Appl. Environ. Microbiol. 73:5692-5697.

4. Antwerpen, M. H., M. Schellhase, E. Ehrentreich-Forster, F. Bier, W. Witte, and U. Nubel. 2007. DNA microarray for detection of antibiotic resistance determinants in Bacillus anthracis and closely related Bacillus cereus. Mol. Cell. Probes 21:152-160.

5. Balajee, S. A., L. Sigler, and M. E. Brandt. 2007. DNA and the classical way: identification of medically important molds in the 21st century. Med. Mycol. 45:475-490.

6. Ballmer, K., B. M. Korczak, P. Kuhnert, P. Slickers, R. Ehricht, and H. Hachler. 2007. Fast DNA serotyping of Escherichia coli by use of an oligonucleotide microarray. J. Clin. Microbiol. 45:370-379.

7. Barlaan, E. A., S. Furukawa, and K. Takeuchi. 2007. Detection of bacteria associated with harmful algal blooms from coastal and microcosm environments using electronic microarrays. Environ. Microbiol. 9:690-702.

8. Baxi, M. K., S. Baxi, A. Clavijo, K. M. Burton, and D. Deregt. 2006. Microarray-based detection and typing of foot-and-mouth disease virus. Vet. J. 172:473-481.

9. Bijlsma, J. J., P. Burghout, T. G. Kloosterman, H. J. Bootsma, A. de Jong, P. W. Hermans, and O. P. Kuipers. 2007. Development of genomic array footprinting for identification of conditionally essential genes in Streptococcus pneumoniae. Appl. Environ. Microbiol. 73:1514-1524.

10. Bodrossy, L., N. Stralis-Pavese, M. Konrad-Koszler, A. Weilharter, T. G. Reichenauer, D. Schofer, and A. Sessitsch. 2006. mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray. Appl. Environ. Microbiol. 72:1672-1676.

11. Brodie, E. L., T. Z. Desantis, D. C. Joyner, S. M. Baek, J. T. Larsen, G. L. Andersen, T. C. Hazen, P. M. Richardson, D. J. Herman, T. K. Tokunaga, J. M. Wan, and M. K. Firestone. 2006. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl. Environ. Microbiol. 72:6288-6298.

12. Bruant, G., C. Maynard, S. Bekal, I. Gaucher, L. Masson, R. Brousseau, and J. Harel. 2006. Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli. Appl. Environ. Microbiol. 72:3780-3784.

13. Bruant, G., C. Maynard, S. Bekal, I. Gaucher, L. Masson, R. Brousseau, and J. Harel. 2006. Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli. Appl. Environ. Microbiol. 72:3780-3784.

14. Burton, J. E., O. J. Oshota, and N. J. Silman. 2006. Differential identification of Bacillus anthracis from environmental Bacillus species using microarray analysis. J. Appl. Microbiol. 101:754-763.

15. Call, D. R., M. S. Kang, J. Daniels, and T. E. Besser. 2006. Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray. J. Appl. Microbiol. 100:15-28.

16. Caoili, J. C., A. Mayorova, D. Sikes, L. Hickman, B. B. Plikaytis, and T. M. Shinnick. 2006. Evaluation of the TB-Biochip oligonucleotide microarray system for rapid detection of rifampin resistance in Mycobacterium tuberculosis. J. Clin. Microbiol. 44:2378-2381.

17. Cassone, M., M. M. D’Andrea, F. Iannelli, M. R. Oggioni, G. M. Rossolini, and G. Pozzi. 2006. DNA microarray for detection of macrolide resistance genes. Antimicrob. Agents Chemother. 50:2038-2041.

18. Chandler, D. P., O. Alferov, B. Chernov, D. S. Daly, J. Golova, A. Perov, M. Protic, R. Robison, M. Schipma, A. White, and A. Willse. 2006. Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates. J. Clin. Microbiol. 44:244-250.

19. Chen, T. C., G. W. Chen, C. A. Hsiung, J. Y. Yang, S. R. Shih, Y. K. Lai, and J. L. Juang. 2006. Combining multiplex reverse transcription-PCR and a diagnostic microarray to detect and differentiate enterovirus 71 and coxsackievirus A16. J. Clin. Microbiol. 44:2212-2219.

20. Chou, C. C., T. T. Lee, C. H. Chen, H. Y. Hsiao, Y. L. Lin, M. S. Ho, P. C. Yang, and K. Peck. 2006. Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinformatics 7:232.

21. Cleven, B. E., M. Palka-Santini, J. Gielen, S. Meembor, M. Kronke, and O. Krut. 2006. Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray. J. Clin. Microbiol. 44:2389-2397.

22. Cobo, F., and A. Concha. 2007. Application of microarray technology for microbial diagnosis in stem cell cultures: a review. Cytotherapy 9:53-59.

23. DeSantis, T. Z., E. L. Brodie, J. P. Moberg, I. X. Zubieta, Y. M. Piceno, and G. L. Andersen. 2007. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb. Ecol. 53:371-383.

24. Ehricht, R., P. Slickers, S. Goellner, H. Hotzel, and K. Sachse. 2006. Optimized DNA microarray assay allows detection and genotyping of single PCR-amplifiable target copies. Mol. Cell. Probes 20:60-63.

25. Feng, S., and E. R. Tillier. 2007. A fast and flexible approach to oligonucleotide probe design for genomes and gene families. Bioinformatics 23:1195-1202.

26. Francois, P., Y. Charbonnier, J. Jacquet, D. Utinger, M. Bento, D. Lew, G. M. Kresbach, M. Ehrat, W. Schlegel, and J. Schrenzel. 2006. Rapid bacterial identification using evanescent-waveguide oligonucleotide microarray classification. J. Microbiol. Methods 65:390-403.

27. Frye, J. G., T. Jesse, F. Long, G. Rondeau, S. Porwollik, M. McClelland, C. R. Jackson, M. Englen, and P. J. Fedorka-Cray. 2006. DNA microarray detection of antimicrobial resistance genes in diverse bacteria. Int. J. Antimicrob. Agents 27:138-151.

28. Gao, H., Z. K. Yang, T. J. Gentry, L. Wu, C. W. Schadt, and J. Zhou. 2007. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. Appl. Environ. Microbiol. 73:563-571.

29. Garrido, P., M. Blanco, M. Moreno-Paz, C. Briones, G. Dahbi, J. Blanco, J. Blanco, and V. Parro. 2006. STEC-EPEC oligonucleotide microarray: a new tool for typing genetic variants of the LEE pathogenicity island of human and animal Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) strains. Clin. Chem. 52:192-201.

30. Gehring, A. G., D. M. Albin, A. K. Bhunia, S. A. Reed, S. I. Tu, and J. Uknalis. 2006. Antibody microarray detection of Escherichia coli O157:H7: Quantification, assay limitations, and capture efficiency. Anal. Chem. 78:6601-6607.

31. Gheit, T., G. Billoud, M. N. de Koning, F. Gemignani, O. Forslund, B. S. Sylla, S. Vaccarella, S. Franceschi, S. Landi, W. G. Quint, F. Canzian, and M. Tommasino. 2007. Development of a sensitive and specific multiplex PCR method combined with DNA microarray primer extension to detect Betapapillomavirus types. J. Clin. Microbiol. 45:2537-2544.

32. Goldschmidt, M. C. 2006. The use of biosensor and microarray techniques in the rapid detection and identification of salmonellae. J. AOAC Int. 89:530-537.

33. Gunther, S., I. Groth, S. Grabley, and T. Munder. 2006. Design and evaluation of an oligonucleotide-microarray for the detection of different species of the genus Kitasatospora. J. Microbiol. Methods 65:226-236.

34. Hamelin, K., G. Bruant, A. El-Shaarawi, S. Hill, T. A. Edge, S. Bekal, J. M. Fairbrother, J. Harel, C. Maynard, L. Masson, and R. Brousseau. 2006. A virulence and antimicrobial resistance DNA microarray detects a high frequency of virulence genes in Escherichia coli isolates from Great Lakes recreational waters. Appl. Environ. Microbiol. 72:4200-4206.

35. Han, W., B. Liu, B. Cao, L. Beutin, U. Kruger, H. Liu, Y. Li, Y. Liu, L. Feng, and L. Wang. 2007. DNA microarray-based identification of serogroups and virulence gene patterns of Escherichia coli isolates associated with porcine postweaning diarrhea and edema disease. Appl. Environ. Microbiol. 73:4082-4088.

36. Keum, K. C., S. M. Yoo, S. Y. Lee, K. H. Chang, N. C. Yoo, W. M. Yoo, J. M. Kim, J. Y. Choi, J. S. Kim, and G. Lee. 2006. DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii. Mol. Cell. Probes 20:42-50.

37. Kim, H., M. D. Kane, S. Kim, W. Dominguez, B. M. Applegate, and S. Savikhin. 2007. A molecular beacon DNA microarray system for rapid detection of E. coli O157:H7 that eliminates the risk of a false negative signal. Biosens. Bioelectron. 22:1041-1047.

38. Kostic, T., A. Weilharter, S. Rubino, G. Delogu, S. Uzzau, K. Rudi, A. Sessitsch, and L. Bodrossy. 2007. A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens. Anal. Biochem. 360:244-254.

39. Kristensen, R., G. Gauthier, K. G. Berdal, S. Hamels, J. Remacle, and A. Holst-Jensen. 2007. DNA microarray to detect and identify trichothecene- and moniliformin-producing Fusarium species. J. Appl. Microbiol. 102:1060-1070.

40. Lee, D. Y., K. Shannon, and L. A. Beaudette. 2006. Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR. J. Microbiol. Methods 65:453-467.

41. Leidreiter, M., and M. Kuhne. 2007. Determination of the minimum enrichment time for the qualitative detection of Listeria monocytogenes in minced pork meat using multiplex-PCR, microarray and ELISA. Berl. Munch. Tierarztl. Wochenschr. 120:79-85.

42. Li, C., R. S. Chen, S. K. Hung, Y. T. Lee, C. Y. Yen, Y. W. Lai, R. H. Teng, J. Y. Huang, Y. C. Tang, C. P. Tung, T. T. Wei, B. Shieh, and S. T. Liu. 2006. Detection of Epstein-Barr virus infection and gene expression in human tumors by microarray analysis. J. Virol. Methods 133:158-166.

43. Li, H., M. A. McCormac, R. W. Estes, S. E. Sefers, R. K. Dare, J. D. Chappell, D. D. Erdman, P. F. Wright, and Y. W. Tang. 2007. Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections. J. Clin. Microbiol. 45:2105-2109.

44. Li, Y., D. Liu, B. Cao, W. Han, Y. Liu, F. Liu, X. Guo, D. A. Bastin, L. Feng, and L. Wang. 2006. Development of a serotype-specific DNA microarray for identification of some Shigella and pathogenic Escherichia coli strains. J. Clin. Microbiol. 44:4376-4383.

45. Lin, B., K. M. Blaney, A. P. Malanoski, A. G. Ligler, J. M. Schnur, D. Metzgar, K. L. Russell, and D. A. Stenger. 2007. Using a resequencing microarray as a multiple respiratory pathogen detection assay. J. Clin. Microbiol. 45:443-452.

46. Liu, Y., Z. Gong, N. Morin, O. Pui, M. Cheung, H. Zhang, and X. F. Li. 2006. Electronic deoxyribonucleic acid (DNA) microarray detection of viable pathogenic Escherichia coli, Vibrio cholerae, and Salmonella typhi. Anal. Chim. Acta 578:75-81.

47. Liu, Y. C., G. S. Huang, M. C. Wu, M. Y. Hong, and K. P. Hsiung. 2006. Detection of foot and mouth disease and porcine reproductive and respiratory syndrome viral genes using microarray chip. Vet. Res. Commun. 30:191-204.

48. Loy, A., and L. Bodrossy. 2006. Highly parallel microbial diagnostics using oligonucleotide microarrays. Clin. Chim. Acta 363:106-119.

49. Ma, M., H. Wang, Y. Yu, D. Zhang, and S. Liu. 2007. Detection of antimicrobial resistance genes of pathogenic Salmonella from swine with DNA microarray. J. Vet. Diagn. Invest. 19:161-167.

50. Majtan, T., L. Majtanova, J. Timko, and V. Majtan. 2007. Oligonucleotide microarray for molecular characterization and genotyping of Salmonella spp. strains. J. Antimicrob. Chemother. 60:937-946.

51. Masson, L., C. Maynard, R. Brousseau, S. H. Goh, S. M. Hemmingsen, J. E. Hill, A. Paccagnella, R. Oda, and N. Kimura. 2006. Identification of pathogenic Helicobacter species by chaperonin-60 differentiation on plastic DNA arrays. Genomics 87:104-112.

52. Mehlmann, M., A. B. Bonner, J. V. Williams, D. M. Dankbar, C. L. Moore, R. D. Kuchta, A. B. Podsiad, J. D. Tamerius, E. D. Dawson, and K. L. Rowlen. 2007. Comparison of the MChip to viral culture, reverse transcription-PCR, and the QuickVue influenza A+B test for rapid diagnosis of influenza. J. Clin. Microbiol. 45:1234-1237.

53. Mitterer, G., and W. M. Schmidt. 2006. Microarray-based detection of bacteria by on-chip PCR. Methods Mol. Biol. 345:37-51.

54. Myers, K. M., J. Gaba, and S. F. Al-Khaldi. 2006. Molecular identification of Yersinia enterocolitica isolated from pasteurized whole milk using DNA microarray chip hybridization. Mol. Cell. Probes 20:71-80.

55. Palaniappan, R. U., Y. Zhang, D. Chiu, A. Torres, C. Debroy, T. S. Whittam, and Y. F. Chang. 2006. Differentiation of Escherichia coli pathotypes by oligonucleotide spotted array. J. Clin. Microbiol. 44:1495-1501.

56. Palmer, C., E. M. Bik, M. B. Eisen, P. B. Eckburg, T. R. Sana, P. K. Wolber, D. A. Relman, and P. O. Brown. 2006. Rapid quantitative profiling of complex microbial populations. Nucleic Acids Res. 34:e5.

57. Patterson, A. J., R. Colangeli, P. Spigaglia, and K. P. Scott. 2007. Distribution of specific tetracycline and erythromycin resistance genes in environmental samples assessed by macroarray detection. Environ. Microbiol. 9:703-715.

58. Peplies, J., C. Lachmund, F. O. Glockner, and W. Manz. 2006. A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Appl. Environ. Microbiol. 72:4829-4838.

59. Quan, P. L., G. Palacios, O. J. Jabado, S. Conlan, D. L. Hirschberg, F. Pozo, P. J. Jack, D. Cisterna, N. Renwick, J. Hui, A. Drysdale, R. Amos-Ritchie, E. Baumeister, V. Savy, K. M. Lager, J. A. Richt, D. B. Boyle, A. Garcia-Sastre, I. Casas, P. Perez-Brena, T. Briese, and W. I. Lipkin. 2007. Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray. J. Clin. Microbiol. 45:2359-2364.

60. Quinones, B., C. T. Parker, J. M. Janda Jr, W. G. Miller, and R. E. Mandrell. 2007. Detection and genotyping of Arcobacter and Campylobacter isolates from retail chicken samples by use of DNA oligonucleotide arrays. Appl. Environ. Microbiol. 73:3645-3655.

61. Sachse, K., H. Hotzel, P. Slickers, and R. Ehricht. 2006. The use of DNA microarray technology for detection and genetic characterisation of chlamydiae. Dev. Biol. (Basel) 126:203-10; discussion 326-7.

62. Sanguin, H., A. Herrera, C. Oger-Desfeux, A. Dechesne, P. Simonet, E. Navarro, T. M. Vogel, Y. Moenne-Loccoz, X. Nesme, and G. L. Grundmann. 2006. Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Environ. Microbiol. 8:289-307.

63. Seo, S. S., Y. S. Song, J. W. Kim, N. H. Park, S. B. Kang, and H. P. Lee. 2006. Good correlation of HPV DNA test between self-collected vaginal and clinician-collected cervical samples by the oligonucleotide microarray. Gynecol. Oncol. 102:67-73.

64. Sergeev, N., M. Distler, M. Vargas, V. Chizhikov, K. E. Herold, and A. Rasooly. 2006. Microarray analysis of Bacillus cereus group virulence factors. J. Microbiol. Methods 65:488-502.

65. Siripong, S., J. J. Kelly, D. A. Stahl, and B. E. Rittmann. 2006. Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples. Environ. Microbiol. 8:1564-1574.

66. Strommenger, B., C. Schmidt, G. Werner, B. Roessle-Lorch, T. T. Bachmann, and W. Witte. 2007. DNA microarray for the detection of therapeutically relevant antibiotic resistance determinants in clinical isolates of Staphylococcus aureus. Mol. Cell. Probes 21:161-170.

67. Taroncher-Oldenburg, G., and B. B. Ward. 2007. Oligonucleotide microarrays for the study of coastal microbial communities. Methods Mol. Biol. 353:301-315.

68. Tobler, N. E., M. Pfunder, K. Herzog, J. E. Frey, and M. Altwegg. 2006. Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray. J. Microbiol. Methods 66:116-124.

69. Townsend, M. B., E. D. Dawson, M. Mehlmann, J. A. Smagala, D. M. Dankbar, C. L. Moore, C. B. Smith, N. J. Cox, R. D. Kuchta, and K. L. Rowlen. 2006. Experimental evaluation of the FluChip diagnostic microarray for influenza virus surveillance. J. Clin. Microbiol. 44:2863-2871.

70. Wang, Q., M. Wang, F. Kong, G. L. Gilbert, B. Cao, L. Wang, and L. Feng. 2007. Development of a DNA microarray to identify the Streptococcus pneumoniae serotypes contained in the 23-valent pneumococcal polysaccharide vaccine and closely related serotypes. J. Microbiol. Methods 68:128-136.

71. Wang, X. W., L. Zhang, L. Q. Jin, M. Jin, Z. Q. Shen, S. An, F. H. Chao, and J. W. Li. 2007. Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens. Appl. Microbiol. Biotechnol. 76:225-233.

72. Wiesinger-Mayr, H., K. Vierlinger, R. Pichler, A. Kriegner, A. M. Hirschl, E. Presterl, L. Bodrossy, and C. Noehammer. 2007. Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition. BMC Microbiol. 7:78.

73. Wong, C. W., C. L. Heng, L. Wan Yee, S. W. Soh, C. B. Kartasasmita, E. A. Simoes, M. L. Hibberd, W. K. Sung, and L. D. Miller. 2007. Optimization and clinical validation of a pathogen detection microarray. Genome Biol. 8:R93.

74. Wu, L., X. Liu, C. W. Schadt, and J. Zhou. 2006. Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Appl. Environ. Microbiol. 72:4931-4941.

75. Yin, H., L. Cao, G. Qiu, D. Wang, L. Kellogg, J. Zhou, Z. Dai, and X. Liu. 2007. Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems. J. Microbiol. Methods 70:165-178.

76. Yu, X., M. Susa, J. Weile, C. Knabbe, R. D. Schmid, and T. T. Bachmann. 2007. Rapid and sensitive detection of fluoroquinolone-resistant Escherichia coli from urine samples using a genotyping DNA microarray. Int. J. Med. Microbiol. 297:417-429.

77. Zhu, L. X., Z. W. Zhang, D. Liang, D. Jiang, C. Wang, N. Du, Q. Zhang, K. Mitchelson, and J. Cheng. 2007. Multiplex asymmetric PCR-based oligonucleotide microarray for detection of drug resistance genes containing single mutations in Enterobacteriaceae. Antimicrob. Agents Chemother. 51:3707-3713.

 

Select Reviews on Diagnostic Microarrays

1. Anthony, R. M., T. J. Brown, and G. L. French. 2001. DNA array technology and diagnostic microbiology. Expert Rev. Mol. Diagn. 1:30-38.

2. Avarre, J. C., P. de Lajudie, and G. Bena. 2007. Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples. J. Microbiol. Methods 69:242-248.

3. Bae, J. W., and Y. H. Park. 2006. Homogeneous versus heterogeneous probes for microbial ecological microarrays. Trends Biotechnol. 24:318-323.

4. Bodrossy, L., and A. Sessitsch. 2004. Oligonucleotide microarrays in microbial diagnostics. Curr. Opin. Microbiol. 7:245-254.

5. Boonham, N., J. Tomlinson, and R. Mumford. 2007. Microarrays for rapid identification of plant viruses. Annu. Rev. Phytopathol. 45:307-328.

6. Bryant, P. A., D. Venter, R. Robins-Browne, and N. Curtis. 2004. Chips with everything: DNA microarrays in infectious diseases. Lancet Infect. Dis. 4:100-111.

7. Call, D. R. 2005. Challenges and opportunities for pathogen detection using DNA microarrays. Crit. Rev. Microbiol. 31:91-99.

8. Cassone, M., A. Giordano, and G. Pozzi. 2007. Bacterial DNA microarrays for clinical microbiology: the early logarithmic phase. Front. Biosci. 12:2658-2669.

9. Clewley, J. P. 2004. A role for arrays in clinical virology: fact or fiction? J. Clin. Virol. 29:2-12.

10. Ehrenreich, A. 2006. DNA microarray technology for the microbiologist: an overview. Appl. Microbiol. Biotechnol. 73:255-273.

11. Garaizar, J., A. Rementeria, and S. Porwollik. 2006. DNA microarray technology: a new tool for the epidemiological typing of bacterial pathogens? FEMS Immunol. Med. Microbiol. 47:178-189.

12. Gentry, T. J., G. S. Wickham, C. W. Schadt, Z. He, and J. Zhou. 2006. Microarray applications in microbial ecology research. Microb. Ecol. 52:159-175.

13. Gilbert, G. L. 2002. Molecular diagnostics in infectious diseases and public health microbiology: cottage industry to postgenomics. Trends Mol. Med. 8:280-287.

14. Greene, E. A., and G. Voordouw. 2003. Analysis of environmental microbial communities by reverse sample genome probing. J. Microbiol. Methods 53:211-219.

15. Hashsham, S. A., L. M. Wick, J. M. Rouillard, E. Gulari, and J. M. Tiedje. 2004. Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs. Biosens. Bioelectron. 20:668-683.

16. Karczmarczyk, M., and M. Bartoszcze. 2006. DNA microarrays–new tool in the identification of biological agents. Przegl. Epidemiol. 60:803-811.

17. Kostrzynska, M., and A. Bachand. 2006. Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens. Can. J. Microbiol. 52:1-8.

18. Lemarchand, K., L. Masson, and R. Brousseau. 2004. Molecular biology and DNA microarray technology for microbial quality monitoring of water. Crit. Rev. Microbiol. 30:145-172.

19. Liu-Stratton, Y., S. Roy, and C. K. Sen. 2004. DNA microarray technology in nutraceutical and food safety. Toxicol. Lett. 150:29-42.

20. Loy, A., and L. Bodrossy. 2006. Highly parallel microbial diagnostics using oligonucleotide microarrays. Clin. Chim. Acta 363:106-119.

21. Majtan, T., G. Bukovska, and J. Timko. 2004. DNA microarrays–techniques and applications in microbial systems. Folia Microbiol. (Praha) 49:635-664.

22. Maynard, J. A., R. Myhre, and B. Roy. 2007. Microarrays in infection and immunity. Curr. Opin. Chem. Biol. 11:306-315.

23. Petrik, J. 2006. Diagnostic applications of microarrays. Transfus. Med. 16:233-247.

24. Pickup, R. W., G. Rhodes, and J. Hermon-Taylor. 2003. Monitoring bacterial pathogens in the environment: advantages of a multilayered approach. Curr. Opin. Biotechnol. 14:319-325.

25. Sessitsch, A., E. Hackl, P. Wenzl, A. Kilian, T. Kostic, N. Stralis-Pavese, B. T. Sandjong, and L. Bodrossy. 2006. Diagnostic microbial microarrays in soil ecology. New Phytol. 171:719-735.

26. Stahl, D. A. 2004. High-throughput techniques for analyzing complex bacterial communities. Adv. Exp. Med. Biol. 547:5-17.

27. Starke, E. M., J. C. Smoot, J. H. Wu, W. T. Liu, D. Chandler, and D. A. Stahl. 2007. Saliva-based diagnostics using 16S rRNA microarrays and microfluidics. Ann. N. Y. Acad. Sci. 1098:345-361.

28. Stenger, D. A., J. D. Andreadis, G. J. Vora, and J. J. Pancrazio. 2002. Potential applications of DNA microarrays in biodefense-related diagnostics. Curr. Opin. Biotechnol. 13:208-212.

29. Straub, T. M., and D. P. Chandler. 2003. Towards a unified system for detecting waterborne pathogens. J. Microbiol. Methods 53:185-197.

30. Striebel, H. M., E. Birch-Hirschfeld, R. Egerer, and Z. Foldes-Papp. 2003. Virus diagnostics on microarrays. Curr. Pharm. Biotechnol. 4:401-415.

31. Uttamchandani, M., D. P. Walsh, S. Q. Yao, and Y. T. Chang. 2005. Small molecule microarrays: recent advances and applications. Curr. Opin. Chem. Biol. 9:4-13.

32. Wagner, M., H. Smidt, A. Loy, and J. Zhou. 2007. Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb. Ecol. 53:498-506.

33. Zammatteo, N., S. Hamels, F. De Longueville, I. Alexandre, J. L. Gala, F. Brasseur, and J. Remacle. 2002. New chips for molecular biology and diagnostics. Biotechnol. Annu. Rev. 8:85-101.

34. Zhou, J. 2003. Microarrays for bacterial detection and microbial community analysis. Curr. Opin. Microbiol. 6:288-294.