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	<title>Those Little Molecular Biology Secrets</title>
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	<description>Things you always skip in publications</description>
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		<title>Selected Diagnostic Microarray Publications between 2006 and 2007</title>
		<link>http://joyscaria.wordpress.com/2008/01/03/selected-diagnostic-microarray-publications-between-2006-and-2007/</link>
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		<description><![CDATA[1. Afset, J. E., G. Bruant, R. Brousseau, J. Harel, E. Anderssen, L. Bevanger, and K. Bergh. 2006. Identification of virulence genes linked with diarrhea due to atypical enteropathogenic Escherichia coli by DNA microarray analysis and PCR. J. Clin. Microbiol. 44:3703-3711.
2. Albrecht, V., A. Chevallier, V. Magnone, P. Barbry, F. Vandenbos, A. Bongain, J. C. [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=joyscaria.wordpress.com&blog=2336328&post=12&subd=joyscaria&ref=&feed=1" />]]></description>
			<content:encoded><![CDATA[<div class='snap_preview'><br /><p style="line-height:220%;">1. <b>Afset, J. E., G. Bruant, R. Brousseau, J. Harel, E. Anderssen, L. Bevanger, and K. Bergh. </b>2006. Identification of virulence genes linked with diarrhea due to atypical enteropathogenic Escherichia coli by DNA microarray analysis and PCR. J. Clin. Microbiol. <b>44:</b>3703-3711.</p>
<p style="line-height:220%;">2. <b>Albrecht, V., A. Chevallier, V. Magnone, P. Barbry, F. Vandenbos, A. Bongain, J. C. Lefebvre, and V. Giordanengo. </b>2006. Easy and fast detection and genotyping of high-risk human papillomavirus by dedicated DNA microarrays. J. Virol. Methods <b>137:</b>236-244.</p>
<p style="line-height:220%;">3. <b>Anjum, M. F., M. Mafura, P. Slickers, K. Ballmer, P. Kuhnert, M. J. Woodward, and R. Ehricht. </b>2007. Pathotyping Escherichia coli by using miniaturized DNA microarrays. Appl. Environ. Microbiol. <b>73:</b>5692-5697.</p>
<p style="line-height:220%;">4. <b>Antwerpen, M. H., M. Schellhase, E. Ehrentreich-Forster, F. Bier, W. Witte, and U. Nubel. </b>2007. DNA microarray for detection of antibiotic resistance determinants in Bacillus anthracis and closely related Bacillus cereus. Mol. Cell. Probes <b>21:</b>152-160.</p>
<p style="line-height:220%;">5. <b>Balajee, S. A., L. Sigler, and M. E. Brandt. </b>2007. DNA and the classical way: identification of medically important molds in the 21st century. Med. Mycol. <b>45:</b>475-490.</p>
<p style="line-height:220%;">6. <b>Ballmer, K., B. M. Korczak, P. Kuhnert, P. Slickers, R. Ehricht, and H. Hachler. </b>2007. Fast DNA serotyping of Escherichia coli by use of an oligonucleotide microarray. J. Clin. Microbiol. <b>45:</b>370-379.</p>
<p style="line-height:220%;">7. <b>Barlaan, E. A., S. Furukawa, and K. Takeuchi. </b>2007. Detection of bacteria associated with harmful algal blooms from coastal and microcosm environments using electronic microarrays. Environ. Microbiol. <b>9:</b>690-702.</p>
<p style="line-height:220%;">8. <b>Baxi, M. K., S. Baxi, A. Clavijo, K. M. Burton, and D. Deregt. </b>2006. Microarray-based detection and typing of foot-and-mouth disease virus. Vet. J. <b>172:</b>473-481.</p>
<p style="line-height:220%;">9. <b>Bijlsma, J. J., P. Burghout, T. G. Kloosterman, H. J. Bootsma, A. de Jong, P. W. Hermans, and O. P. Kuipers. </b>2007. Development of genomic array footprinting for identification of conditionally essential genes in Streptococcus pneumoniae. Appl. Environ. Microbiol. <b>73:</b>1514-1524.</p>
<p style="line-height:220%;">10. <b>Bodrossy, L., N. Stralis-Pavese, M. Konrad-Koszler, A. Weilharter, T. G. Reichenauer, D. Schofer, and A. Sessitsch. </b>2006. mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray. Appl. Environ. Microbiol. <b>72:</b>1672-1676.</p>
<p style="line-height:220%;">11. <b>Brodie, E. L., T. Z. Desantis, D. C. Joyner, S. M. Baek, J. T. Larsen, G. L. Andersen, T. C. Hazen, P. M. Richardson, D. J. Herman, T. K. Tokunaga, J. M. Wan, and M. K. Firestone. </b>2006. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl. Environ. Microbiol. <b>72:</b>6288-6298.</p>
<p style="line-height:220%;">12. <b>Bruant, G., C. Maynard, S. Bekal, I. Gaucher, L. Masson, R. Brousseau, and J. Harel. </b>2006. Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli. Appl. Environ. Microbiol. <b>72:</b>3780-3784.</p>
<p style="line-height:220%;">13. <b>Bruant, G., C. Maynard, S. Bekal, I. Gaucher, L. Masson, R. Brousseau, and J. Harel. </b>2006. Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli. Appl. Environ. Microbiol. <b>72:</b>3780-3784.</p>
<p style="line-height:220%;">14. <b>Burton, J. E., O. J. Oshota, and N. J. Silman. </b>2006. Differential identification of Bacillus anthracis from environmental Bacillus species using microarray analysis. J. Appl. Microbiol. <b>101:</b>754-763.</p>
<p style="line-height:220%;">15. <b>Call, D. R., M. S. Kang, J. Daniels, and T. E. Besser. </b>2006. Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray. J. Appl. Microbiol. <b>100:</b>15-28.</p>
<p style="line-height:220%;">16. <b>Caoili, J. C., A. Mayorova, D. Sikes, L. Hickman, B. B. Plikaytis, and T. M. Shinnick. </b>2006. Evaluation of the TB-Biochip oligonucleotide microarray system for rapid detection of rifampin resistance in Mycobacterium tuberculosis. J. Clin. Microbiol. <b>44:</b>2378-2381.</p>
<p style="line-height:220%;">17. <b>Cassone, M., M. M. D&#8217;Andrea, F. Iannelli, M. R. Oggioni, G. M. Rossolini, and G. Pozzi. </b>2006. DNA microarray for detection of macrolide resistance genes. Antimicrob. Agents Chemother. <b>50:</b>2038-2041.</p>
<p style="line-height:220%;">18. <b>Chandler, D. P., O. Alferov, B. Chernov, D. S. Daly, J. Golova, A. Perov, M. Protic, R. Robison, M. Schipma, A. White, and A. Willse. </b>2006. Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates. J. Clin. Microbiol. <b>44:</b>244-250.</p>
<p style="line-height:220%;">19. <b>Chen, T. C., G. W. Chen, C. A. Hsiung, J. Y. Yang, S. R. Shih, Y. K. Lai, and J. L. Juang. </b>2006. Combining multiplex reverse transcription-PCR and a diagnostic microarray to detect and differentiate enterovirus 71 and coxsackievirus A16. J. Clin. Microbiol. <b>44:</b>2212-2219.</p>
<p style="line-height:220%;">20. <b>Chou, C. C., T. T. Lee, C. H. Chen, H. Y. Hsiao, Y. L. Lin, M. S. Ho, P. C. Yang, and K. Peck. </b>2006. Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinformatics <b>7:</b>232.</p>
<p style="line-height:220%;">21. <b>Cleven, B. E., M. Palka-Santini, J. Gielen, S. Meembor, M. Kronke, and O. Krut. </b>2006. Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray. J. Clin. Microbiol. <b>44:</b>2389-2397.</p>
<p style="line-height:220%;">22. <b>Cobo, F., and A. Concha. </b>2007. Application of microarray technology for microbial diagnosis in stem cell cultures: a review. Cytotherapy <b>9:</b>53-59.</p>
<p style="line-height:220%;">23. <b>DeSantis, T. Z., E. L. Brodie, J. P. Moberg, I. X. Zubieta, Y. M. Piceno, and G. L. Andersen. </b>2007. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb. Ecol. <b>53:</b>371-383.</p>
<p style="line-height:220%;">24. <b>Ehricht, R., P. Slickers, S. Goellner, H. Hotzel, and K. Sachse. </b>2006. Optimized DNA microarray assay allows detection and genotyping of single PCR-amplifiable target copies. Mol. Cell. Probes <b>20:</b>60-63.</p>
<p style="line-height:220%;">25. <b>Feng, S., and E. R. Tillier. </b>2007. A fast and flexible approach to oligonucleotide probe design for genomes and gene families. Bioinformatics <b>23:</b>1195-1202.</p>
<p style="line-height:220%;">26. <b>Francois, P., Y. Charbonnier, J. Jacquet, D. Utinger, M. Bento, D. Lew, G. M. Kresbach, M. Ehrat, W. Schlegel, and J. Schrenzel. </b>2006. Rapid bacterial identification using evanescent-waveguide oligonucleotide microarray classification. J. Microbiol. Methods <b>65:</b>390-403.</p>
<p style="line-height:220%;">27. <b>Frye, J. G., T. Jesse, F. Long, G. Rondeau, S. Porwollik, M. McClelland, C. R. Jackson, M. Englen, and P. J. Fedorka-Cray. </b>2006. DNA microarray detection of antimicrobial resistance genes in diverse bacteria. Int. J. Antimicrob. Agents <b>27:</b>138-151.</p>
<p style="line-height:220%;">28. <b>Gao, H., Z. K. Yang, T. J. Gentry, L. Wu, C. W. Schadt, and J. Zhou. </b>2007. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. Appl. Environ. Microbiol. <b>73:</b>563-571.</p>
<p style="line-height:220%;">29. <b>Garrido, P., M. Blanco, M. Moreno-Paz, C. Briones, G. Dahbi, J. Blanco, J. Blanco, and V. Parro. </b>2006. STEC-EPEC oligonucleotide microarray: a new tool for typing genetic variants of the LEE pathogenicity island of human and animal Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) strains. Clin. Chem. <b>52:</b>192-201.</p>
<p style="line-height:220%;">30. <b>Gehring, A. G., D. M. Albin, A. K. Bhunia, S. A. Reed, S. I. Tu, and J. Uknalis. </b>2006. Antibody microarray detection of Escherichia coli O157:H7: Quantification, assay limitations, and capture efficiency. Anal. Chem. <b>78:</b>6601-6607.</p>
<p style="line-height:220%;">31. <b>Gheit, T., G. Billoud, M. N. de Koning, F. Gemignani, O. Forslund, B. S. Sylla, S. Vaccarella, S. Franceschi, S. Landi, W. G. Quint, F. Canzian, and M. Tommasino. </b>2007. Development of a sensitive and specific multiplex PCR method combined with DNA microarray primer extension to detect Betapapillomavirus types. J. Clin. Microbiol. <b>45:</b>2537-2544.</p>
<p style="line-height:220%;">32. <b>Goldschmidt, M. C. </b>2006. The use of biosensor and microarray techniques in the rapid detection and identification of salmonellae. J. AOAC Int. <b>89:</b>530-537.</p>
<p style="line-height:220%;">33. <b>Gunther, S., I. Groth, S. Grabley, and T. Munder. </b>2006. Design and evaluation of an oligonucleotide-microarray for the detection of different species of the genus Kitasatospora. J. Microbiol. Methods <b>65:</b>226-236.</p>
<p style="line-height:220%;">34. <b>Hamelin, K., G. Bruant, A. El-Shaarawi, S. Hill, T. A. Edge, S. Bekal, J. M. Fairbrother, J. Harel, C. Maynard, L. Masson, and R. Brousseau. </b>2006. A virulence and antimicrobial resistance DNA microarray detects a high frequency of virulence genes in Escherichia coli isolates from Great Lakes recreational waters. Appl. Environ. Microbiol. <b>72:</b>4200-4206.</p>
<p style="line-height:220%;">35. <b>Han, W., B. Liu, B. Cao, L. Beutin, U. Kruger, H. Liu, Y. Li, Y. Liu, L. Feng, and L. Wang. </b>2007. DNA microarray-based identification of serogroups and virulence gene patterns of Escherichia coli isolates associated with porcine postweaning diarrhea and edema disease. Appl. Environ. Microbiol. <b>73:</b>4082-4088.</p>
<p style="line-height:220%;">36. <b>Keum, K. C., S. M. Yoo, S. Y. Lee, K. H. Chang, N. C. Yoo, W. M. Yoo, J. M. Kim, J. Y. Choi, J. S. Kim, and G. Lee. </b>2006. DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii. Mol. Cell. Probes <b>20:</b>42-50.</p>
<p style="line-height:220%;">37. <b>Kim, H., M. D. Kane, S. Kim, W. Dominguez, B. M. Applegate, and S. Savikhin. </b>2007. A molecular beacon DNA microarray system for rapid detection of E. coli O157:H7 that eliminates the risk of a false negative signal. Biosens. Bioelectron. <b>22:</b>1041-1047.</p>
<p style="line-height:220%;">38. <b>Kostic, T., A. Weilharter, S. Rubino, G. Delogu, S. Uzzau, K. Rudi, A. Sessitsch, and L. Bodrossy. </b>2007. A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens. Anal. Biochem. <b>360:</b>244-254.</p>
<p style="line-height:220%;">39. <b>Kristensen, R., G. Gauthier, K. G. Berdal, S. Hamels, J. Remacle, and A. Holst-Jensen. </b>2007. DNA microarray to detect and identify trichothecene- and moniliformin-producing Fusarium species. J. Appl. Microbiol. <b>102:</b>1060-1070.</p>
<p style="line-height:220%;">40. <b>Lee, D. Y., K. Shannon, and L. A. Beaudette. </b>2006. Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR. J. Microbiol. Methods <b>65:</b>453-467.</p>
<p style="line-height:220%;">41. <b>Leidreiter, M., and M. Kuhne. </b>2007. Determination of the minimum enrichment time for the qualitative detection of Listeria monocytogenes in minced pork meat using multiplex-PCR, microarray and ELISA. Berl. Munch. Tierarztl. Wochenschr. <b>120:</b>79-85.</p>
<p style="line-height:220%;">42. <b>Li, C., R. S. Chen, S. K. Hung, Y. T. Lee, C. Y. Yen, Y. W. Lai, R. H. Teng, J. Y. Huang, Y. C. Tang, C. P. Tung, T. T. Wei, B. Shieh, and S. T. Liu. </b>2006. Detection of Epstein-Barr virus infection and gene expression in human tumors by microarray analysis. J. Virol. Methods <b>133:</b>158-166.</p>
<p style="line-height:220%;">43. <b>Li, H., M. A. McCormac, R. W. Estes, S. E. Sefers, R. K. Dare, J. D. Chappell, D. D. Erdman, P. F. Wright, and Y. W. Tang. </b>2007. Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections. J. Clin. Microbiol. <b>45:</b>2105-2109.</p>
<p style="line-height:220%;">44. <b>Li, Y., D. Liu, B. Cao, W. Han, Y. Liu, F. Liu, X. Guo, D. A. Bastin, L. Feng, and L. Wang. </b>2006. Development of a serotype-specific DNA microarray for identification of some Shigella and pathogenic Escherichia coli strains. J. Clin. Microbiol. <b>44:</b>4376-4383.</p>
<p style="line-height:220%;">45. <b>Lin, B., K. M. Blaney, A. P. Malanoski, A. G. Ligler, J. M. Schnur, D. Metzgar, K. L. Russell, and D. A. Stenger. </b>2007. Using a resequencing microarray as a multiple respiratory pathogen detection assay. J. Clin. Microbiol. <b>45:</b>443-452.</p>
<p style="line-height:220%;">46. <b>Liu, Y., Z. Gong, N. Morin, O. Pui, M. Cheung, H. Zhang, and X. F. Li. </b>2006. Electronic deoxyribonucleic acid (DNA) microarray detection of viable pathogenic Escherichia coli, Vibrio cholerae, and Salmonella typhi. Anal. Chim. Acta <b>578:</b>75-81.</p>
<p style="line-height:220%;">47. <b>Liu, Y. C., G. S. Huang, M. C. Wu, M. Y. Hong, and K. P. Hsiung. </b>2006. Detection of foot and mouth disease and porcine reproductive and respiratory syndrome viral genes using microarray chip. Vet. Res. Commun. <b>30:</b>191-204.</p>
<p style="line-height:220%;">48. <b>Loy, A., and L. Bodrossy. </b>2006. Highly parallel microbial diagnostics using oligonucleotide microarrays. Clin. Chim. Acta <b>363:</b>106-119.</p>
<p style="line-height:220%;">49. <b>Ma, M., H. Wang, Y. Yu, D. Zhang, and S. Liu. </b>2007. Detection of antimicrobial resistance genes of pathogenic Salmonella from swine with DNA microarray. J. Vet. Diagn. Invest. <b>19:</b>161-167.</p>
<p style="line-height:220%;">50. <b>Majtan, T., L. Majtanova, J. Timko, and V. Majtan. </b>2007. Oligonucleotide microarray for molecular characterization and genotyping of Salmonella spp. strains. J. Antimicrob. Chemother. <b>60:</b>937-946.</p>
<p style="line-height:220%;">51. <b>Masson, L., C. Maynard, R. Brousseau, S. H. Goh, S. M. Hemmingsen, J. E. Hill, A. Paccagnella, R. Oda, and N. Kimura. </b>2006. Identification of pathogenic Helicobacter species by chaperonin-60 differentiation on plastic DNA arrays. Genomics <b>87:</b>104-112.</p>
<p style="line-height:220%;">52. <b>Mehlmann, M., A. B. Bonner, J. V. Williams, D. M. Dankbar, C. L. Moore, R. D. Kuchta, A. B. Podsiad, J. D. Tamerius, E. D. Dawson, and K. L. Rowlen. </b>2007. Comparison of the MChip to viral culture, reverse transcription-PCR, and the QuickVue influenza A+B test for rapid diagnosis of influenza. J. Clin. Microbiol. <b>45:</b>1234-1237.</p>
<p style="line-height:220%;">53. <b>Mitterer, G., and W. M. Schmidt. </b>2006. Microarray-based detection of bacteria by on-chip PCR. Methods Mol. Biol. <b>345:</b>37-51.</p>
<p style="line-height:220%;">54. <b>Myers, K. M., J. Gaba, and S. F. Al-Khaldi. </b>2006. Molecular identification of Yersinia enterocolitica isolated from pasteurized whole milk using DNA microarray chip hybridization. Mol. Cell. Probes <b>20:</b>71-80.</p>
<p style="line-height:220%;">55. <b>Palaniappan, R. U., Y. Zhang, D. Chiu, A. Torres, C. Debroy, T. S. Whittam, and Y. F. Chang. </b>2006. Differentiation of Escherichia coli pathotypes by oligonucleotide spotted array. J. Clin. Microbiol. <b>44:</b>1495-1501.</p>
<p style="line-height:220%;">56. <b>Palmer, C., E. M. Bik, M. B. Eisen, P. B. Eckburg, T. R. Sana, P. K. Wolber, D. A. Relman, and P. O. Brown. </b>2006. Rapid quantitative profiling of complex microbial populations. Nucleic Acids Res. <b>34:</b>e5.</p>
<p style="line-height:220%;">57. <b>Patterson, A. J., R. Colangeli, P. Spigaglia, and K. P. Scott. </b>2007. Distribution of specific tetracycline and erythromycin resistance genes in environmental samples assessed by macroarray detection. Environ. Microbiol. <b>9:</b>703-715.</p>
<p style="line-height:220%;">58. <b>Peplies, J., C. Lachmund, F. O. Glockner, and W. Manz. </b>2006. A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Appl. Environ. Microbiol. <b>72:</b>4829-4838.</p>
<p style="line-height:220%;">59. <b>Quan, P. L., G. Palacios, O. J. Jabado, S. Conlan, D. L. Hirschberg, F. Pozo, P. J. Jack, D. Cisterna, N. Renwick, J. Hui, A. Drysdale, R. Amos-Ritchie, E. Baumeister, V. Savy, K. M. Lager, J. A. Richt, D. B. Boyle, A. Garcia-Sastre, I. Casas, P. Perez-Brena, T. Briese, and W. I. Lipkin. </b>2007. Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray. J. Clin. Microbiol. <b>45:</b>2359-2364.</p>
<p style="line-height:220%;">60. <b>Quinones, B., C. T. Parker, J. M. Janda Jr, W. G. Miller, and R. E. Mandrell. </b>2007. Detection and genotyping of Arcobacter and Campylobacter isolates from retail chicken samples by use of DNA oligonucleotide arrays. Appl. Environ. Microbiol. <b>73:</b>3645-3655.</p>
<p style="line-height:220%;">61. <b>Sachse, K., H. Hotzel, P. Slickers, and R. Ehricht. </b>2006. The use of DNA microarray technology for detection and genetic characterisation of chlamydiae. Dev. Biol. (Basel) <b>126:</b>203-10; discussion 326-7.</p>
<p style="line-height:220%;">62. <b>Sanguin, H., A. Herrera, C. Oger-Desfeux, A. Dechesne, P. Simonet, E. Navarro, T. M. Vogel, Y. Moenne-Loccoz, X. Nesme, and G. L. Grundmann. </b>2006. Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Environ. Microbiol. <b>8:</b>289-307.</p>
<p style="line-height:220%;">63. <b>Seo, S. S., Y. S. Song, J. W. Kim, N. H. Park, S. B. Kang, and H. P. Lee. </b>2006. Good correlation of HPV DNA test between self-collected vaginal and clinician-collected cervical samples by the oligonucleotide microarray. Gynecol. Oncol. <b>102:</b>67-73.</p>
<p style="line-height:220%;">64. <b>Sergeev, N., M. Distler, M. Vargas, V. Chizhikov, K. E. Herold, and A. Rasooly. </b>2006. Microarray analysis of Bacillus cereus group virulence factors. J. Microbiol. Methods <b>65:</b>488-502.</p>
<p style="line-height:220%;">65. <b>Siripong, S., J. J. Kelly, D. A. Stahl, and B. E. Rittmann. </b>2006. Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples. Environ. Microbiol. <b>8:</b>1564-1574.</p>
<p style="line-height:220%;">66. <b>Strommenger, B., C. Schmidt, G. Werner, B. Roessle-Lorch, T. T. Bachmann, and W. Witte. </b>2007. DNA microarray for the detection of therapeutically relevant antibiotic resistance determinants in clinical isolates of Staphylococcus aureus. Mol. Cell. Probes <b>21:</b>161-170.</p>
<p style="line-height:220%;">67. <b>Taroncher-Oldenburg, G., and B. B. Ward. </b>2007. Oligonucleotide microarrays for the study of coastal microbial communities. Methods Mol. Biol. <b>353:</b>301-315.</p>
<p style="line-height:220%;">68. <b>Tobler, N. E., M. Pfunder, K. Herzog, J. E. Frey, and M. Altwegg. </b>2006. Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray. J. Microbiol. Methods <b>66:</b>116-124.</p>
<p style="line-height:220%;">69. <b>Townsend, M. B., E. D. Dawson, M. Mehlmann, J. A. Smagala, D. M. Dankbar, C. L. Moore, C. B. Smith, N. J. Cox, R. D. Kuchta, and K. L. Rowlen. </b>2006. Experimental evaluation of the FluChip diagnostic microarray for influenza virus surveillance. J. Clin. Microbiol. <b>44:</b>2863-2871.</p>
<p style="line-height:220%;">70. <b>Wang, Q., M. Wang, F. Kong, G. L. Gilbert, B. Cao, L. Wang, and L. Feng. </b>2007. Development of a DNA microarray to identify the Streptococcus pneumoniae serotypes contained in the 23-valent pneumococcal polysaccharide vaccine and closely related serotypes. J. Microbiol. Methods <b>68:</b>128-136.</p>
<p style="line-height:220%;">71. <b>Wang, X. W., L. Zhang, L. Q. Jin, M. Jin, Z. Q. Shen, S. An, F. H. Chao, and J. W. Li. </b>2007. Development and application of an oligonucleotide microarray for the detection of food-borne bacterial pathogens. Appl. Microbiol. Biotechnol. <b>76:</b>225-233.</p>
<p style="line-height:220%;">72. <b>Wiesinger-Mayr, H., K. Vierlinger, R. Pichler, A. Kriegner, A. M. Hirschl, E. Presterl, L. Bodrossy, and C. Noehammer. </b>2007. Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition. BMC Microbiol. <b>7:</b>78.</p>
<p style="line-height:220%;">73. <b>Wong, C. W., C. L. Heng, L. Wan Yee, S. W. Soh, C. B. Kartasasmita, E. A. Simoes, M. L. Hibberd, W. K. Sung, and L. D. Miller. </b>2007. Optimization and clinical validation of a pathogen detection microarray. Genome Biol. <b>8:</b>R93.</p>
<p style="line-height:220%;">74. <b>Wu, L., X. Liu, C. W. Schadt, and J. Zhou. </b>2006. Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Appl. Environ. Microbiol. <b>72:</b>4931-4941.</p>
<p style="line-height:220%;">75. <b>Yin, H., L. Cao, G. Qiu, D. Wang, L. Kellogg, J. Zhou, Z. Dai, and X. Liu. </b>2007. Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems. J. Microbiol. Methods <b>70:</b>165-178.</p>
<p style="line-height:220%;">76. <b>Yu, X., M. Susa, J. Weile, C. Knabbe, R. D. Schmid, and T. T. Bachmann. </b>2007. Rapid and sensitive detection of fluoroquinolone-resistant Escherichia coli from urine samples using a genotyping DNA microarray. Int. J. Med. Microbiol. <b>297:</b>417-429.</p>
<p style="line-height:220%;">77. <b>Zhu, L. X., Z. W. Zhang, D. Liang, D. Jiang, C. Wang, N. Du, Q. Zhang, K. Mitchelson, and J. Cheng. </b>2007. Multiplex asymmetric PCR-based oligonucleotide microarray for detection of drug resistance genes containing single mutations in Enterobacteriaceae. Antimicrob. Agents Chemother. <b>51:</b>3707-3713.</p>
<p style="line-height:220%;">&nbsp;</p>
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		<title>Select Reviews on Diagnostic Microarrays</title>
		<link>http://joyscaria.wordpress.com/2008/01/03/select-reviews-on-diagnostic-microarrays/</link>
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		<pubDate>Thu, 03 Jan 2008 02:07:29 +0000</pubDate>
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				<category><![CDATA[Microarray]]></category>

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1. Anthony, R. M., T. J. Brown, and G. L. French. 2001. DNA array technology and diagnostic microbiology. Expert Rev. Mol. Diagn. 1:30-38.
2. Avarre, J. C., P. de Lajudie, and G. Bena. 2007. Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples. J. Microbiol. Methods 69:242-248.
3. Bae, J. W., and [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=joyscaria.wordpress.com&blog=2336328&post=11&subd=joyscaria&ref=&feed=1" />]]></description>
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<p style="line-height:220%;">1. <b>Anthony, R. M., T. J. Brown, and G. L. French. </b>2001. DNA array technology and diagnostic microbiology. Expert Rev. Mol. Diagn. <b>1:</b>30-38.</p>
<p style="line-height:220%;">2. <b>Avarre, J. C., P. de Lajudie, and G. Bena. </b>2007. Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples. J. Microbiol. Methods <b>69:</b>242-248.</p>
<p style="line-height:220%;">3. <b>Bae, J. W., and Y. H. Park. </b>2006. Homogeneous versus heterogeneous probes for microbial ecological microarrays. Trends Biotechnol. <b>24:</b>318-323.</p>
<p style="line-height:220%;">4. <b>Bodrossy, L., and A. Sessitsch. </b>2004. Oligonucleotide microarrays in microbial diagnostics. Curr. Opin. Microbiol. <b>7:</b>245-254.</p>
<p style="line-height:220%;">5. <b>Boonham, N., J. Tomlinson, and R. Mumford. </b>2007. Microarrays for rapid identification of plant viruses. Annu. Rev. Phytopathol. <b>45:</b>307-328.</p>
<p style="line-height:220%;">6. <b>Bryant, P. A., D. Venter, R. Robins-Browne, and N. Curtis. </b>2004. Chips with everything: DNA microarrays in infectious diseases. Lancet Infect. Dis. <b>4:</b>100-111.</p>
<p style="line-height:220%;">7. <b>Call, D. R. </b>2005. Challenges and opportunities for pathogen detection using DNA microarrays. Crit. Rev. Microbiol. <b>31:</b>91-99.</p>
<p style="line-height:220%;">8. <b>Cassone, M., A. Giordano, and G. Pozzi. </b>2007. Bacterial DNA microarrays for clinical microbiology: the early logarithmic phase. Front. Biosci. <b>12:</b>2658-2669.</p>
<p style="line-height:220%;">9. <b>Clewley, J. P. </b>2004. A role for arrays in clinical virology: fact or fiction? J. Clin. Virol. <b>29:</b>2-12.</p>
<p style="line-height:220%;">10. <b>Ehrenreich, A. </b>2006. DNA microarray technology for the microbiologist: an overview. Appl. Microbiol. Biotechnol. <b>73:</b>255-273.</p>
<p style="line-height:220%;">11. <b>Garaizar, J., A. Rementeria, and S. Porwollik. </b>2006. DNA microarray technology: a new tool for the epidemiological typing of bacterial pathogens? FEMS Immunol. Med. Microbiol. <b>47:</b>178-189.</p>
<p style="line-height:220%;">12. <b>Gentry, T. J., G. S. Wickham, C. W. Schadt, Z. He, and J. Zhou. </b>2006. Microarray applications in microbial ecology research. Microb. Ecol. <b>52:</b>159-175.</p>
<p style="line-height:220%;">13. <b>Gilbert, G. L. </b>2002. Molecular diagnostics in infectious diseases and public health microbiology: cottage industry to postgenomics. Trends Mol. Med. <b>8:</b>280-287.</p>
<p style="line-height:220%;">14. <b>Greene, E. A., and G. Voordouw. </b>2003. Analysis of environmental microbial communities by reverse sample genome probing. J. Microbiol. Methods <b>53:</b>211-219.</p>
<p style="line-height:220%;">15. <b>Hashsham, S. A., L. M. Wick, J. M. Rouillard, E. Gulari, and J. M. Tiedje. </b>2004. Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs. Biosens. Bioelectron. <b>20:</b>668-683.</p>
<p style="line-height:220%;">16. <b>Karczmarczyk, M., and M. Bartoszcze. </b>2006. DNA microarrays&#8211;new tool in the identification of biological agents. Przegl. Epidemiol. <b>60:</b>803-811.</p>
<p style="line-height:220%;">17. <b>Kostrzynska, M., and A. Bachand. </b>2006. Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens. Can. J. Microbiol. <b>52:</b>1-8.</p>
<p style="line-height:220%;">18. <b>Lemarchand, K., L. Masson, and R. Brousseau. </b>2004. Molecular biology and DNA microarray technology for microbial quality monitoring of water. Crit. Rev. Microbiol. <b>30:</b>145-172.</p>
<p style="line-height:220%;">19. <b>Liu-Stratton, Y., S. Roy, and C. K. Sen. </b>2004. DNA microarray technology in nutraceutical and food safety. Toxicol. Lett. <b>150:</b>29-42.</p>
<p style="line-height:220%;">20. <b>Loy, A., and L. Bodrossy. </b>2006. Highly parallel microbial diagnostics using oligonucleotide microarrays. Clin. Chim. Acta <b>363:</b>106-119.</p>
<p style="line-height:220%;">21. <b>Majtan, T., G. Bukovska, and J. Timko. </b>2004. DNA microarrays&#8211;techniques and applications in microbial systems. Folia Microbiol. (Praha) <b>49:</b>635-664.</p>
<p style="line-height:220%;">22. <b>Maynard, J. A., R. Myhre, and B. Roy. </b>2007. Microarrays in infection and immunity. Curr. Opin. Chem. Biol. <b>11:</b>306-315.</p>
<p style="line-height:220%;">23. <b>Petrik, J. </b>2006. Diagnostic applications of microarrays. Transfus. Med. <b>16:</b>233-247.</p>
<p style="line-height:220%;">24. <b>Pickup, R. W., G. Rhodes, and J. Hermon-Taylor. </b>2003. Monitoring bacterial pathogens in the environment: advantages of a multilayered approach. Curr. Opin. Biotechnol. <b>14:</b>319-325.</p>
<p style="line-height:220%;">25. <b>Sessitsch, A., E. Hackl, P. Wenzl, A. Kilian, T. Kostic, N. Stralis-Pavese, B. T. Sandjong, and L. Bodrossy. </b>2006. Diagnostic microbial microarrays in soil ecology. New Phytol. <b>171:</b>719-735.</p>
<p style="line-height:220%;">26. <b>Stahl, D. A. </b>2004. High-throughput techniques for analyzing complex bacterial communities. Adv. Exp. Med. Biol. <b>547:</b>5-17.</p>
<p style="line-height:220%;">27. <b>Starke, E. M., J. C. Smoot, J. H. Wu, W. T. Liu, D. Chandler, and D. A. Stahl. </b>2007. Saliva-based diagnostics using 16S rRNA microarrays and microfluidics. Ann. N. Y. Acad. Sci. <b>1098:</b>345-361.</p>
<p style="line-height:220%;">28. <b>Stenger, D. A., J. D. Andreadis, G. J. Vora, and J. J. Pancrazio. </b>2002. Potential applications of DNA microarrays in biodefense-related diagnostics. Curr. Opin. Biotechnol. <b>13:</b>208-212.</p>
<p style="line-height:220%;">29. <b>Straub, T. M., and D. P. Chandler. </b>2003. Towards a unified system for detecting waterborne pathogens. J. Microbiol. Methods <b>53:</b>185-197.</p>
<p style="line-height:220%;">30. <b>Striebel, H. M., E. Birch-Hirschfeld, R. Egerer, and Z. Foldes-Papp. </b>2003. Virus diagnostics on microarrays. Curr. Pharm. Biotechnol. <b>4:</b>401-415.</p>
<p style="line-height:220%;">31. <b>Uttamchandani, M., D. P. Walsh, S. Q. Yao, and Y. T. Chang. </b>2005. Small molecule microarrays: recent advances and applications. Curr. Opin. Chem. Biol. <b>9:</b>4-13.</p>
<p style="line-height:220%;">32. <b>Wagner, M., H. Smidt, A. Loy, and J. Zhou. </b>2007. Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb. Ecol. <b>53:</b>498-506.</p>
<p style="line-height:220%;">33. <b>Zammatteo, N., S. Hamels, F. De Longueville, I. Alexandre, J. L. Gala, F. Brasseur, and J. Remacle. </b>2002. New chips for molecular biology and diagnostics. Biotechnol. Annu. Rev. <b>8:</b>85-101.</p>
<p style="line-height:220%;">34. <b>Zhou, J. </b>2003. Microarrays for bacterial detection and microbial community analysis. Curr. Opin. Microbiol. <b>6:</b>288-294.</p>
<p style="line-height:220%;">&nbsp;</p>
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